Load required libraries

library("hdxstats")
library("dplyr")
library("ggplot2")
library("RColorBrewer")
library("tidyr")
library("pheatmap")
library("scales")
library("viridis")
library("patchwork")
library("Biostrings")
library("xfun")
library("tidyverse")
source("R/test_script_app2.R")

Parsing Raw Data

Parse input raw data and output QFeatures object instance given a CSV file path for different test cases.

# First test case
csv_filepath <- "/homes/sanjuan/R/x86_64-pc-linux-gnu-library/4.1/hdxstats/extdata/MBP.csv"

# CASE 1: Parse data, given input data file path + parameter file
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/myparameters.hdxp")

# CASE 2: Parse data, given input data file path + list of parameters
data <- read_csv(csv_filepath)
myparameters <- make_parameter_file(data)
hdx_data <- extract_hdx_data(csv_filepath, parameters = myparameters)

# CASE 3: Parse data, given input data file path. Work out parameters for pre-processing using interactive mode
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/myparameters.hdxp")

Data Analysis of Deuterium Uptake Kinetics

TEST 1:

Perform Data Analysis: Plain fitting

  • Deuterium-update fitting for all peptides
  • Plain fitting - not comparing against a reference state or condition
# INPUT
data_selection <- hdx_data[,1:24]
all_peptides <- rownames(data_selection)[[1]]
starting_parameters <- list(a = NULL, b = 0.001,  d = NULL, p = 1)
# OUTPUT
results <- analyse_kinetics(data = data_selection, 
                            method = "fit", 
                            peptide_selection = all_peptides, 
                            start = starting_parameters)
results$method

Visualise Output from Data Analysis

View fitting curves of Deu-uptake kinetics for all available conditions associated to selected peptides

graphics_kinetics <- visualise_hdx_data(results, type="kinetics") 
graphics_kinetics[[1]] | graphics_kinetics[[2]] | graphics_kinetics[[3]]

View forest plots showing the difference between uptake measurements between conditions, plus the dispersion between their respective fitting model parameters

graphics_forest <- visualise_hdx_data(results, type="forest")
graphics_forest[[1]] | graphics_forest[[2]] | graphics_forest[[3]]

Combine graphical outputs in a single canvas

graphics_forest[[1]] | graphics_kinetic[[1]]

Display numerical values as a table

graphics_forest[[1]]$data

Perform Data Analysis: Differential fitting

  • Deuterium-update fitting for data selection
  • Differential fitting - with respect to a single reference peptide
# INPUT 
data_selection <- hdx_data[,1:100]
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL, b = 0.0001,  d = NULL, p = 1)

# OUTPUT
results <- analyse_kinetics(data = data_selection, 
                            method = "dfit", 
                            peptide_selection = all_peptides[37], 
                            start = starting_parameters)
graphics_kinetics <- visualise_hdx_data(results, type="kinetics")

View graphical output for reference peptide shown in LHS Top corner.

graphics_kinetics

TEST CASE 2

Single-domain antibody (sdAb) binding assays to HOIP.

csv_filepath <- "/home/sanjuan/R/x86_64-pc-linux-gnu-library/4.2/hdxstats/extdata/N64184_1a2_state.csv" 
data <- read_csv(csv_filepath)
Rows: 3600 Columns: 16
── Column specification ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Delimiter: ","
chr  (3): Protein, Sequence, State
dbl (11): Start, End, MaxUptake, MHP, Exposure, Center, Center SD, Uptake, Uptake SD, RT, RT SD
lgl  (2): Modification, Fragment

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
make_parameter_file(data, save = "vignettes/data/N64184_1a2_state.hdxp")
[1] "INFO: I found these columns in your input CSV file"
 [1] "Protein"      "Start"        "End"          "Sequence"     "Modification" "Fragment"     "MaxUptake"    "MHP"          "State"       
[10] "Exposure"     "Center"       "Center SD"    "Uptake"       "Uptake SD"    "RT"           "RT SD"       
[1] "INFO: Specify the column name indicating the starting peptide residue numbers... OR, enter NA"
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/N64184_1a2_state.hdxp")
[1] "INFO: You gave me a CSV file of your HDX-MSM data"
[1] "INFO: I will pre-process your data parse it using QFeatures ..."
[1] "INFO: You provided a 'parameter_file', I will extract parameters from this to format your output QFeatures data object."
[1] "INFO: You provided a list of 'parameters', I will extract parameters from this to format your output QFeatures data object."
[1] "INFO: Stripped your 'Exposure_Time' values from non-numeric characters."
[1] "INFO: Your original_time_units == 'm'. I will convert your 'Exposure_Time' values to seconds (s)."
[1] "INFO: Your 'Replicate' column appears to be NA. I will add this column with 1 values just to label your data."
[1] "INFO: Your 'Charge' column appears to be NA. I will add this column with 0 values just to label your data."
[1] "INFO: Reformatting your data to a wide format..."
[1] "INFO: Parsing your data as a qDF object class instance. Method: parseDeutData"
[1] "WARNING: Your output data is not normalised."
[1] "WARNING: Your output data was not saved. You can provide an output path with 'save = my_path'"
[1] "INFO: I pre-processed you input CSV data content and now it's available as a QFeatures instance"
# INPUT 
data_selection <- hdx_data[,1:33]
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL, b = 0.01,  d = NULL)
formula = value ~ a * (1 - exp(-b*(timepoint))) + d

# OUTPUT
results <- analyse_kinetics(data = data_selection, 
                            method = "dfit", 
                            peptide_selection = all_peptides[3], 
                            start = starting_parameters,
                            formula = formula)
[1] "INFO: Performing differential fitting of Deuterium uptake kinetics. Method: 'hdxstats::differentialUptakeKinetics' "
[1] "INFO: You specified your own 'formula' for your fitting model."
Warning in fitting_method(object = data, feature = peptide_selection, start = starting_parameters,  :
  NAs introduced by coercion
graphics <- visualise_hdx_data(results, type="kinetics")
[1] "INFO: I found  11  models in your results data."
custom_colors <- scale_color_manual(values = colorRampPalette(brewer.pal(8, name = "Set2"))(11))
graphics + custom_colors
Scale for colour is already present.
Adding another scale for colour, which will replace the existing scale.

Remove intercept Deu uptake values

[1] "INFO: You have 110 peptide-charge paired values"
[1] "INFO: For  GPGQECA_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  CAVCGWALPHNRM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  CAVCGWALPHNRMQAL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  CAVCGWALPHNRMQALTSCE_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  AVCGWALPHNRM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  AVCGWALPHNRMQAL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  AVCGWALPHNRMQALTSCE_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  VCGWALPHNRM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  VCGWALPHNRMQA_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  VCGWALPHNRMQAL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  VCGWALPHNRMQALTSC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  VCGWALPHNRMQALTSCE_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  WALPHNRM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  WALPHNRMQA_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  WALPHNRMQAL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  WALPHNRMQALTS_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  WALPHNRMQALTSCE_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  QALTSCE_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  CTICPDC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  CTICPDCF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  TICPDCF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  FRQHFTIA_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RQHFTIA_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RQHFTIAL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LKEKHITD_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LKEKHITDM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LKEKHITDMVC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  KEKHITDM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  KEKHITDMVC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  KEKHITDMVCPACGRPDLTDDTQL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  MVCPACGRPDLTD_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  MVCPACGRPDLTDDTQL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  VCPACGRPDLTDDTQL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  PACGRPDLTD_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  PACGRPDLTDDTQL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  IQLRESLEPDA_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LRESLEPDA_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RESLEPDA_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RESLEPDAY_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RESLEPDAYAL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RESLEPDAYALF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RESLEPDAYALFHKKLTEGVL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  YALFHKKLTEGVL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  ALFHKKLTEGVL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  FHKKLTEGVL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  HKKLTEGVL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  MRDPKFL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  MRDPKFLWC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  MRDPKFLWCAQ_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  FIYEREQL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  IYEREQL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  REQLEATCPQCHQTF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  EATCPQCHQTF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  EATCPQCHQTFC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  CVRCKRQWEEQHRGRSCE_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  CVRCKRQWEEQHRGRSCED_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  CVRCKRQWEEQHRGRSCEDFQN_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  DFQNWKRMNDPEYQAQGLAM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  FQNWKRMNDPEY_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  FQNWKRMNDPEYQAQGL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  FQNWKRMNDPEYQAQGLAM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  FQNWKRMNDPEYQAQGLAMY_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  WKRMNDPEYQAQGLAM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  KRMNDPEYQAQGLAM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  MYLQENGIDCPKCKF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  YLQENGIDCPKCKF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  YLQENGIDCPKCKFSY_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  YLQENGIDCPKCKFSYA_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LQENGIDCPKCKF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LQENGIDCPKCKFSYA_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  SYALARGGCMHF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  SYALARGGCMHFHCTQCRHQFCSGC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LARGGCMHF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LARGGCMHFHCTQCRHQFCSGC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LARGGCMHFHCTQCRHQFCSGCY_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  ARGGCMHFHCTQCRHQFCSGC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  HFHCTQCRHQFCSGC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  HCTQCRHQFCSGC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  YAKNKCPEPNC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RVKKSLHGHHPRDCL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RVKKSLHGHHPRDCLF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LRLQKLLQDNN_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LRLQKLLQDNNVM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LRLQKLLQDNNVMF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RLQKLLQDNN_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
[1] "INFO: For  RLQKLLQDNNVM_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RLQKLLQDNNVMF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  QKLLQDNN_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  QKLLQDNNVMF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LQDNNVMF_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  NTEPPAGARAVPGGG_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  NTEPPAGARAVPGGGC_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  NTEPPAGARAVPGGGCRV_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  NTEPPAGARAVPGGGCRVIEQ_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  CQAHYKEYL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  CQAHYKEYLVS_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  HYKEYLVS_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  VSLINAHSLDPATL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LINAHSLDPATL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  INAHSLDPATL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LETATERYLHVRPQPLAGEDPPAY_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  ETATERYLHVRPQPLAGEDPPAY_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  ETATERYLHVRPQPLAGEDPPAYQ_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  ATERYLHVRPQPLAGEDPPAY_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  ATERYLHVRPQPLAGEDPPAYQ_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  ATERYLHVRPQPLAGEDPPAYQARL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  ERYLHVRPQPLAGEDPPAYQ_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  ERYLHVRPQPLAGEDPPAYQARL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  RYLHVRPQPLAGEDPPAYQARL_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: For  LQKLTEEVPLGQSIPRRRK_0 , you have 11 conditions"
[1] "INFO: You have 1 replicates, for apo"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb13_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb25_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb27_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb2_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_1"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
[1] "INFO: You have 1 replicates, for dAb6_2"
[1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"

Let’s select column data for the APO state and a bound state with a single domain antibody labelled as dAb25_1

data_selection <- hdx_data_nointercept[,c(1:3, 10:12)]
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL)
formula = value ~ a * (1 - exp(-0.05*(timepoint)))

results <- analyse_kinetics(data = data_selection,
                            method = "fit",
                            peptide_selection = all_peptides, 
                            start = starting_parameters,
                            formula = formula)
[1] "INFO: Performing fitting of Deuterium uptake kinetics. Method: 'hdxstats::fitUptakeKinetics' "

Let’s have look at some of the data analysis output data

results$functional_analysis@results
DataFrame with 110 rows and 8 columns
                            Fstat.Fstat Fstat.numerator Fstat.denomenator     pvals       fdr ebayes.pvals ebayes.fdr
                                 <list>          <list>            <list> <numeric> <numeric>    <numeric>  <numeric>
GPGQECA_0                      0.505943       0.0236133         0.0466718  0.516181  0.652643     0.479007   0.612683
CAVCGWALPHNRM_0                0.819962       0.0111598         0.0136102  0.416403  0.558589     0.406959   0.545920
CAVCGWALPHNRMQAL_0              3.18841        0.130744         0.0410059  0.148709  0.320744     0.123017   0.300707
CAVCGWALPHNRMQALTSCE_0          1.51203        0.598316          0.395703  0.286210  0.499732     0.237829   0.441045
AVCGWALPHNRM_0                 0.138914      0.00401256         0.0288852  0.728272  0.801099     0.708845   0.779730
...                                 ...             ...               ...       ...       ...          ...        ...
ATERYLHVRPQPLAGEDPPAYQARL_0    0.882916       0.0634907         0.0719102  0.400605  0.557804    0.3563859   0.502596
ERYLHVRPQPLAGEDPPAYQ_0         0.841277       0.0671491         0.0798181  0.410930  0.558053    0.3658748   0.509446
ERYLHVRPQPLAGEDPPAYQARL_0       2.11026        0.172771          0.081872  0.219967  0.443454    0.1817334   0.386882
RYLHVRPQPLAGEDPPAYQARL_0        1.65969        0.120275         0.0724686  0.267115  0.481684    0.2263725   0.436859
LQKLTEEVPLGQSIPRRRK_0           4.48223        0.196504         0.0438406  0.101671  0.266280    0.0814249   0.246599
                            fitcomplete
                              <integer>
GPGQECA_0                             1
CAVCGWALPHNRM_0                       2
CAVCGWALPHNRMQAL_0                    3
CAVCGWALPHNRMQALTSCE_0                4
AVCGWALPHNRM_0                        5
...                                 ...
ATERYLHVRPQPLAGEDPPAYQARL_0         106
ERYLHVRPQPLAGEDPPAYQ_0              107
ERYLHVRPQPLAGEDPPAYQARL_0           108
RYLHVRPQPLAGEDPPAYQARL_0            109
LQKLTEEVPLGQSIPRRRK_0               110
which(results$functional_analysis@results$ebayes.fdr < 0.05)
          IQLRESLEPDA_0 RESLEPDAYALFHKKLTEGVL_0         YALFHKKLTEGVL_0       REQLEATCPQCHQTF_0           EATCPQCHQTF_0 
                     36                      42                      43                      52                      53 
      MYLQENGIDCPKCKF_0     YLQENGIDCPKCKFSYA_0      LQENGIDCPKCKFSYA_0 
                     65                      68                      70 
graphics <- visualise_hdx_data(results, type="kinetics")
[1] "INFO: I found  110  models in your results data."
graphics[[36]] + 
graphics[[42]] +
graphics[[43]] +
graphics[[65]] +
graphics[[68]] +
graphics[[70]] +
graphics[[52]] +
graphics[[53]] +
plot_layout(guides = 'collect')

#graphics <- visualise_hdx_data(results, data_selection=data_selection, type="manhatten", reference = NULL)# <<<<--- NEXT
n_cols <- length(as.vector(colnames(data_selection))$incoperation)

message <- paste("INFO: I found",n_cols,"columns in your data selection. I will split your data selection into two and take their difference.")
print(message)
[1] "INFO: I found 6 columns in your data selection. I will split your data selection into two and take their difference."
print(colnames(assay(data_selection)[,1:(n_cols/2)]))
[1] "X0rep1condapo"   "X30rep1condapo"  "X300rep1condapo"
print(colnames(assay(data_selection)[,(1+n_cols/2):n_cols]))
[1] "X0rep1conddAb25_1"   "X30rep1conddAb25_1"  "X300rep1conddAb25_1"
data_diff <- assay(data_selection)[,(1+n_cols/2):n_cols] - assay(data_selection)[,1:(n_cols/2)]

graphics <- list()
for (i in 1:(n_cols/2)){
    graphics[i] <- manhattanplot(params = results$functional_analysis,
                                 sequences = rownames(results$functional_analysis@results), 
                                 region = as.data.frame(data_selection@metadata)[, c("Start", "End")],
                                 difference = data_diff[,i],
                                 nrow = 1)
}
Scale for x is already present.
Adding another scale for x, which will replace the existing scale.
Scale for x is already present.
Adding another scale for x, which will replace the existing scale.
Scale for x is already present.
Adding another scale for x, which will replace the existing scale.
message <- paste("INFO: You have ", length(graphics), "Manhattan plots")
print(message)
[1] "INFO: You have  3 Manhattan plots"
graphics[[2]] + plot_layout(guides = 'collect')

graphics_manhatten <- visualise_hdx_data(results, data_selection= data_selection, type="manhatten")
[1] "INFO: I found 6 columns in your data selection. I will split your data selection into two and take their difference."
[1] "X0rep1condapo"   "X30rep1condapo"  "X300rep1condapo"
[1] "X0rep1conddAb25_1"   "X30rep1conddAb25_1"  "X300rep1conddAb25_1"
Scale for x is already present.
Adding another scale for x, which will replace the existing scale.
Scale for x is already present.
Adding another scale for x, which will replace the existing scale.
Scale for x is already present.
Adding another scale for x, which will replace the existing scale.
[1] "INFO: You have  3 Manhattan plots"
graphics_manhatten[[2]] / graphics_manhatten[[3]] + plot_layout(guides = 'collect')

#graphics <- visualise_hdx_data(results, type="epitope", level="peptide", fasta = "my_fasta_path") # Return an EpitopeMap

fpath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
HOIPfasta <- readAAStringSet(filepath = fpath, "fasta")

scores <- results$functional_analysis@results$ebayes.fdr

out <- plotEpitopeMap(AAString = HOIPfasta[[1]],
                      peptideSeqs = unlist(lapply(strsplit(rownames(assay(hdx_data_nointercept)), split="_"), function(x) head(x,n=1))),
                      numlines = 2,
                      maxmismatch = 2,
                      by = 1, # NOTE: What's the role of this arg that's never called in function?
                      scores = 1 * (-log10(scores[unique(rownames(assay(hdx_data_nointercept)))])  > -log10(0.05)) + 0.0001,
                      name = "significant")
Warning in brewer.pal(n = 2, name = "Set2") :
  minimal value for n is 3, returning requested palette with 3 different levels
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
out[[1]]/(out[[2]]) + plot_layout(guides = 'collect') & theme(legend.position = "right")

#graphics <- visualise_hdx_data(results, type="epitope", level="peptide", fasta = "my_fasta_path") # Return an EpitopeMap

fasta <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
data_selection <- hdx_data_nointercept

#################################
fasta_data <- readAAStringSet(filepath = fasta, "fasta")
message <- paste("INFO: You input FASTA file contains", length(fasta_data), ". I will take the first entry by default.")
print(message)
[1] "INFO: You input FASTA file contains 16 . I will take the first entry by default."
scores <- results$functional_analysis@results$ebayes.fdr
peptide_charge_names <- rownames(results$functional_analysis@results)
peptide_sequences <- unlist(lapply(strsplit(peptide_charge_names, split="_"), function(x) head(x,n=1)))
# NOTE: What about the charged states? Do they get usually ignored?

graphics <- plotEpitopeMap(AAString = fasta_data[[1]],
                      peptideSeqs = peptide_sequences,
                      numlines = 2,
                      maxmismatch = 2,
                      by = 1, # NOTE: What's the role of this arg that's never called in function?
                      scores = 1 * (-log10(scores[unique(peptide_charge_names)])  > -log10(0.05)) + 0.0001,
                      name = "significant")
Warning in brewer.pal(n = 2, name = "Set2") :
  minimal value for n is 3, returning requested palette with 3 different levels
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
graphics[[1]]/(graphics[[2]]) + plot_layout(guides = 'collect') & theme(legend.position = "right")

fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
graphics_epitope <- visualise_hdx_data(results, type="epitope", level="peptide", fasta = fasta_filepath)
[1] "INFO: You input FASTA file contains 16 . I will take the first entry by default."
Warning in brewer.pal(n = 2, name = "Set2") :
  minimal value for n is 3, returning requested palette with 3 different levels
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
[1] "INFO: You have  2 parts for your Epitope map"
graphics_epitope[[1]]/(graphics_epitope[[2]]) + 
plot_layout(guides = 'collect') & theme(legend.position = "right")

#graphics <- visualise_hdx_data(results, type="epitope", level="residue", fasta = "my_fasta_path") # Return heatmap

scores <- results$functional_analysis@results$ebayes.fdr
out2 <- plotEpitopeMapResidue(AAString = HOIPfasta[[1]],
                              peptideSeqs = unlist(lapply(strsplit(rownames(assay(hdx_data_nointercept)), split="_"), function(x) head(x,n=1))),
                              numlines = 2,
                              maxmismatch = 1,
                              by = 5,
                              scores = scores[unique(rownames(assay(hdx_data_nointercept)))],
                              name = "-log10 p value")
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
out2[[1]]/out2[[2]]  + plot_layout(guides = 'collect') & theme(legend.position = "right")

#graphics <- visualise_hdx_data(results, type="epitope", level="residue", fasta = "my_fasta_path") # Return heatmap

fasta <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
#######################################
fasta_data <- readAAStringSet(filepath = fasta, "fasta")
message <- paste("INFO: You input FASTA file contains", length(fasta_data), ". I will take the first entry by default.")
print(message)
[1] "INFO: You input FASTA file contains 16 . I will take the first entry by default."
peptide_charge_names <- rownames(results$functional_analysis@results)
peptide_sequences <- unlist(lapply(strsplit(peptide_charge_names, split="_"), function(x) head(x,n=1)))

scores <- results$functional_analysis@results$ebayes.fdr

graphics_epitope <- plotEpitopeMapResidue(AAString = fasta_data[[1]],
                                          peptideSeqs = peptide_sequences,
                                          numlines = 2,
                                          maxmismatch = 1,
                                          by = 5,
                                          scores = scores[unique(peptide_charge_names)],
                                          name = "-log10 p value")
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
graphics_epitope[[1]]/graphics_epitope[[2]]  + plot_layout(guides = 'collect') & theme(legend.position = "right")

fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
graphics_epitope <- visualise_hdx_data(results, type="epitope", level="residue", fasta = fasta_filepath)
[1] "INFO: You input FASTA file contains 16 . I will take the first entry by default."
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
[1] "INFO: You have  2 parts for your Epitope map"
graphics_epitope[[1]]/(graphics_epitope[[2]]) + 
plot_layout(guides = 'collect') & theme(legend.position = "right")

Map data onto PDB

Load essential libraries

library("NGLVieweR")
library("tidyverse")
library("RColorBrewer")
library("scales")
library("comprehenr")
library("bio3d")

Map protection/deprotection heatmaps onto PDB

source("R/pdb-visualisation.R")
scores <- results$functional_analysis@results$ebayes.fdr

peptide_charge_names <- rownames(results$functional_analysis@results)
peptide_sequences <- unlist(lapply(strsplit(peptide_charge_names, split="_"), function(x) head(x,n=1)))

graphics_data <- ComputeAverageMap(AAString = fasta_data[[1]],
                            peptideSeqs = unique(peptide_sequences),
                            numlines = 2, maxmismatch = 1,
                            by = 10, scores = scores[unique(peptide_charge_names)],
                            name = "-log10 p value")
dataset <- graphics_data
pdb_filepath <- "vignettes/data/5edv_chainA_clean_renumbered.pdb"
mycolor_parameters <- hdx_to_pdb_colours(dataset, pdb_filepath)
[1] "Your HDX input dataset has 379 entries"
[1] "And excluding NA data you only have 379 entries"
[1] "However, your input PDB has only 286 residues in total"
[1] "Your scale limits are  0"    "Your scale limits are  1.37"
[1] "Your values will be coloured using Viridis"

graphics <- NGLVieweR(pdb_filepath) %>%
  stageParameters(backgroundColor = "white", zoomSpeed = 1) %>%
  addRepresentation("cartoon") %>%
  addRepresentation("cartoon", param = list(color=mycolor_parameters, backgroundColor="white")) #%>%
  #setSpin()
graphics

Protection/Deprotection heatmap

fasta <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
fasta_data <- readAAStringSet(filepath = fasta, "fasta")

scores <- results$functional_analysis@results$ebayes.fdr
peptide_charge_names <- rownames(results$functional_analysis@results)
peptide_sequences <- unlist(lapply(strsplit(peptide_charge_names, split="_"), function(x) head(x,n=1)))

n_cols <- length(as.vector(colnames(data_selection))$incoperation)

message <- paste("INFO: I found",n_cols,"columns in your data selection. I will split your data selection into two and take their difference.")
print(message)
[1] "INFO: I found 6 columns in your data selection. I will split your data selection into two and take their difference."
print(colnames(assay(data_selection)[,1:(n_cols/2)]))
[1] "X0rep1condapo"   "X30rep1condapo"  "X300rep1condapo"
print(colnames(assay(data_selection)[,(1+n_cols/2):n_cols]))
[1] "X0rep1conddAb25_1"   "X30rep1conddAb25_1"  "X300rep1conddAb25_1"
hdx_average <- ComputeAverageMap(AAString = fasta_data[[1]],
                                 peptideSeqs = unique(peptide_sequences),
                                 numlines = 2, 
                                 maxmismatch = 1,
                                 by = 10, 
                                 scores = scores[unique(peptide_charge_names)],
                                 name = "-log10 p value")
hdx_diff <- list()
graphics <- list()
qDF <- data_selection
for (i in 1:(n_cols/2)){
    hdx_diff[[i]] <- hdxdifference(object = data_selection,
                                    AAString = fasta_data[[1]],
                                    peptideSeqs = unique(peptide_sequences),
                                    numlines = 1,
                                    maxmismatch = 1,
                                    by = 10,
                                    scores = scores[unique(peptide_charge_names)],
                                    cols = c(i,(n_cols/2 + i)),
                                    name = "-log10 p value (signed)")
    
    graphics[[i]] <- hdxheatmap(averageMaps = list(hdx_average), diffMaps = list(hdx_diff[[i]]$diffMap)) 
}
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Warning in hdxdifference(object = data_selection, AAString = fasta_data[[1]],  :
  NaNs produced
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
message <- paste("INFO: You have ", length(graphics), "Protection/Deprotection heatmaps")
print(message)
[1] "INFO: You have  3 Protection/Deprotection heatmaps"
graphics[[3]][[1]] / graphics[[3]][[2]] + plot_layout(guides = 'collect') & theme(legend.position = "right")

fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
qDF <- data_selection
graphics_protection <- visualise_hdx_data(results, 
                                          type="protection", 
                                          data_selection=data_selection,
                                          level="residue",
                                          fasta = fasta_filepath)
[1] "INFO: I found 6 columns in your data selection. I will split your data selection into two and take their difference."
[1] "X0rep1condapo"   "X30rep1condapo"  "X300rep1condapo"
[1] "X0rep1conddAb25_1"   "X30rep1conddAb25_1"  "X300rep1conddAb25_1"
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Warning in hdxdifference(object = data_selection, AAString = fasta_data[[1]],  :
  NaNs produced
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
[1] "INFO: You have  3 Protection/Deprotection heatmaps"
graphics <- graphics_protection
graphics[[2]][[1]] / graphics[[2]][[2]] +
    plot_layout(guides = 'collect') & theme(legend.position = "right")

pdb_filepath <- "vignettes/data/5edv_chainA_clean_renumbered.pdb"
graphics <- list()
for (i in 1:(n_cols/2)){
    graphics_data <- hdx_average + sign(hdx_diff[[i]]$diffMap)
    mycolor_parameters <- hdx_to_pdb_colours(graphics_data, pdb, cmap_name = "ProtDeprot")
    graphics[[i]] <- NGLVieweR(pdb_filepath) %>%
      stageParameters(backgroundColor = "white", zoomSpeed = 1) %>%
      addRepresentation("cartoon") %>%
      addRepresentation("cartoon", param = list(color=mycolor_parameters, backgroundColor="Prot"))
}
[1] "Your HDX input dataset has 379 entries"
[1] "And excluding NA data you only have 379 entries"
[1] "However, your input PDB has only 286 residues in total"
[1] "Your scale limits are  0"    "Your scale limits are  2.37"
[1] "Negative values will be coloured in Blue, and positive ones on Red"
[1] "Your HDX input dataset has 379 entries"
[1] "And excluding NA data you only have 379 entries"
[1] "However, your input PDB has only 286 residues in total"
[1] "Your scale limits are  0"    "Your scale limits are  2.37"
[1] "Negative values will be coloured in Blue, and positive ones on Red"
[1] "Your HDX input dataset has 379 entries"
[1] "And excluding NA data you only have 379 entries"
[1] "However, your input PDB has only 286 residues in total"
[1] "Your scale limits are  -0.39" "Your scale limits are  2.37" 
[1] "Negative values will be coloured in Blue, and positive ones on Red"
graphics[[3]]
pdb_filepath <- "vignettes/data/5edv_chainA_clean_renumbered.pdb"
graphics_pdbview <- visualise_hdx_data(results, 
                                       data_selection=data_selection,
                                       type="protection", 
                                       level="residue", 
                                       fasta=fasta_filepath, 
                                       pdb=pdb_filepath)
[1] "INFO: I found 6 columns in your data selection. I will split your data selection into two and take their difference."
[1] "X0rep1condapo"   "X30rep1condapo"  "X300rep1condapo"
[1] "X0rep1conddAb25_1"   "X30rep1conddAb25_1"  "X300rep1conddAb25_1"
Warning in hdxdifference(object = data_selection, AAString = fasta_data[[1]],  :
  NaNs produced
[1] "Your HDX input dataset has 379 entries"
[1] "And excluding NA data you only have 379 entries"
[1] "However, your input PDB has only 286 residues in total"
[1] "Your scale limits are  0"    "Your scale limits are  2.37"
[1] "Negative values will be coloured in Blue, and positive ones on Red"
[1] "Your HDX input dataset has 379 entries"
[1] "And excluding NA data you only have 379 entries"
[1] "However, your input PDB has only 286 residues in total"
[1] "Your scale limits are  0"    "Your scale limits are  2.37"
[1] "Negative values will be coloured in Blue, and positive ones on Red"
[1] "Your HDX input dataset has 379 entries"
[1] "And excluding NA data you only have 379 entries"
[1] "However, your input PDB has only 286 residues in total"
[1] "Your scale limits are  -0.39" "Your scale limits are  2.37" 
[1] "Negative values will be coloured in Blue, and positive ones on Red"

TEST CASE 3

Original raw data

#csv_filepath <- "inst/extdata/Project_2_SecA_Cluster_Data.csv"
#data <- read_csv(csv_filepath)
#data$Replicate <- unlist(lapply(strsplit(data$File, split="_"), function(x) tail(x, n=1)))
#write_csv(data, file = "inst/extdata/Project_2_SecA_Cluster_Data_edited.csv")

csv_filepath <- "inst/extdata/Project_2_SecA_Cluster_Data_edited.csv"

Had to pre-process its content to add Replicate column

#data <- read_csv(csv_filepath)
#make_parameter_file(data, save = "vignettes/data/Project_2_SecA_Cluster_Data.hdxp")
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/Project_2_SecA_Cluster_Data.hdxp")
pheatmap(t(assay(hdx_data)),
         cluster_rows = FALSE, 
         cluster_cols = FALSE,
         color = brewer.pal(n = 9, name = "BuPu"),
         main = "secA heatmap", 
         fontsize = 14,
         legend_breaks = c(0, 1, 2, 3, 4, 5, 6, max(assay(hdx_data))),
         legend_labels = c("0", "1", "2", "3", "4", "5", "6", "Incorporation"))
# Find out how many unique peptides and charge states exist
length(rownames(assay(hdx_data)))
# Extract all column values for a given peptide and charge state ( all states, all replicates, all timepoints)
peptide_charge <- "VIMDF_1" # "SSQYESAL_1"
Deu_min_global <- apply(assay(hdx_data), 1, function(x) min(x, na.rm = TRUE))[[peptide_charge]]
peptide_charge_data <- as.data.frame(assay(hdx_data))[peptide_charge, ]
peptide_charge_data <- longFormat(peptide_charge_data)
peptide_charge_data$condition <- as.factor(str_match(peptide_charge_data$colname, "cond\\s*(.*)")[, 2]) # Modify this for data analysis functions since they expect a numeric for replicates
peptide_charge_conditions <- unique(peptide_charge_data$condition)
# For a fixed confition
state <- "SecAYEG_AMPPNP"
ldf <- peptide_charge_data %>% subset(condition == state)
ldf$timepoint <- as.numeric(str_match(ldf$colname, "X\\s*(.*?)\\s*rep")[, 2])
ldf$replicates <- as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])
# Identify if number of replicates for 0 timepoint match for subsequent timepoints and report if not the case
#sum(ldf$timepoint == 0)
#length(unique(ldf$timepoint))
ldf$replicates <- unlist(lapply(strsplit(as.vector(as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])), split="_"), function(x) tail(x, n=1)))

# Subtract Deu uptake value at 0 timepoint
replicate_number <- 3
single_replicate_data <- ldf %>% subset(replicates == replicate_number)
x <- single_replicate_data %>% subset(timepoint == 0) # NOTE: Sometimes there will be more than one 0 timepoint
message <- paste("INFO: You have", length(x$value),"Deu uptake values for the zero timepoint.")
print(message)

if (all(is.na(x$value))){
    message <- "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
    print(message)
    single_replicate_data$value <- single_replicate_data$value - Deu_min_global
    print(single_replicate_data)
}else{
    message <- "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
    print(message)
    Deu_min <- min(x$value, na.rm = TRUE)
    print("BEFORE")
    print(single_replicate_data)
    single_replicate_data$value <- single_replicate_data$value - Deu_min
    print("AFTER")
    print(single_replicate_data)
}
message <-paste("INFO: You have", length(rownames(assay(hdx_data))), "peptide-charge paired values")
print(message)
ldf_new <- rbind()
for (peptide_charge in rownames(assay(hdx_data))){
  peptide_charge_data <- as.data.frame(assay(hdx_data))[peptide_charge, ]
  peptide_charge_data <- longFormat(peptide_charge_data)
  peptide_charge_data$condition <- as.factor(str_match(peptide_charge_data$colname, "cond\\s*(.*)")[, 2])
  
  Deu_min_global <- apply(assay(hdx_data), 1, function(x) min(x, na.rm = TRUE))[[peptide_charge]]
  
  peptide_charge_conditions <- unique(peptide_charge_data$condition)
  message <- paste("INFO: For ", peptide_charge, ", you have", length(peptide_charge_conditions), "conditions")
  print(message)
  
  #ldf_new <- rbind()
  for (state in peptide_charge_conditions){
    ldf <- peptide_charge_data %>% subset(condition == state)
    ldf$timepoint <- as.numeric(str_match(ldf$colname, "X\\s*(.*?)\\s*rep")[, 2])
    ldf$replicates <- as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])
    
    ldf$replicates <- unlist(lapply(strsplit(as.vector(as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])), split="_"), function(x) tail(x, n=1)))
    # Subtract Deu uptake value at 0 timepoint
    message <- paste("INFO: You have", length(unique(ldf$replicates)), "replicates, for", state)
    print(message)
    
    for (n_replicate in unique(ldf$replicates)){
      single_replicate_data <- ldf %>% subset(replicates == n_replicate)
      x <- single_replicate_data %>% subset(timepoint == 0)
      
      if (all(is.na(x$value))){
        message <- "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
        print(message)
        single_replicate_data$value <- single_replicate_data$value - Deu_min_global
        #print(single_replicate_data)
        ldf_new <- rbind(ldf_new, single_replicate_data)
        }else{
            message <- "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
            print(message)
            Deu_min <- min(x$value, na.rm = TRUE)
            single_replicate_data$value <- single_replicate_data$value - Deu_min
            #print(single_replicate_data)
            ldf_new <- rbind(ldf_new, single_replicate_data)
        }
    }
  }
}

x <- DataFrame(ldf_new)
x_wide <- pivot_wider(data.frame(x), values_from = value, id_cols = rowname, names_from = colname)
x_wide_df <- DataFrame(x_wide)
x_wide_df$rownames <- x_wide$rowname
qFeat <- readQFeatures(data.frame(x_wide_df), ecol = 1:ncol(assay(hdx_data)), name = names(hdx_data), fnames = "rownames")
#graphics <- visualise_hdx_data(results, type="kinetics") # READY
#graphics <- visualise_hdx_data(results, type="forest") # READY

# NOTE: This only works to compare ONLY TWO distinct conditions, for the same timepoint, for all peptide fragments
# This needs to define a BASELINE state/condition and an ALTERNATE sate/condition
# NOTE: Data must be normalised by intercept 
#graphics <- visualise_hdx_data(results, type="manhatten", reference = NULL)# <<<<--- NEXT
#graphics <- visualise_hdx_data(results, type="epitope", level="peptide", fasta = "my_fasta_path") # Return an EpitopeMap # <<<<--- NEXT
#graphics <- visualise_hdx_data(results, type="epitope", level="residue", fasta = "my_fasta_path") # Return heatmap # <<<<--- NEXT
#graphics <- visualise_hdx_data(results, type="epitope", level="residue", pdb="my_pdb_path") # Return heatmap projected onto PDB # <<<<--- NEXT

#graphics <- visualise_hdx_data(results, type="protection", level="peptide") # Return heatmap for peptide residue-number ranges
graphics <- visualise_hdx_data(results, type="protection", level="residue", fasta = "my_fasta_path") # Return heatmap
graphics <- visualise_hdx_data(results, type="protection", level="residue", pdb="my_pdb_path") # Return heatmap projected onto PDB

# GUI: Make GUI by assembling these building blocks
---
title: "R Notebook"
output: html_notebook
---

# Load required libraries

```{r}
library("hdxstats")
library("dplyr")
library("ggplot2")
library("RColorBrewer")
library("tidyr")
library("pheatmap")
library("scales")
library("viridis")
library("patchwork")
library("Biostrings")
library("xfun")
library("tidyverse")
```

```{r}
source("R/test_script_app2.R")
```


# Parsing Raw Data

Parse input raw data and output `QFeatures` object instance given a CSV file path for different test cases.

```{r}
# First test case
csv_filepath <- "/homes/sanjuan/R/x86_64-pc-linux-gnu-library/4.1/hdxstats/extdata/MBP.csv"

# CASE 1: Parse data, given input data file path + parameter file
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/myparameters.hdxp")

# CASE 2: Parse data, given input data file path + list of parameters
data <- read_csv(csv_filepath)
myparameters <- make_parameter_file(data)
hdx_data <- extract_hdx_data(csv_filepath, parameters = myparameters)

# CASE 3: Parse data, given input data file path. Work out parameters for pre-processing using interactive mode

```


```{r}
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/myparameters.hdxp")
```


# Data Analysis of Deuterium Uptake Kinetics

## TEST 1:

### Perform Data Analysis: Plain fitting

* Deuterium-update fitting for all peptides
* Plain fitting - not comparing against a reference state or condition

```{r}
# INPUT
data_selection <- hdx_data[,1:24]
all_peptides <- rownames(data_selection)[[1]]
starting_parameters <- list(a = NULL, b = 0.001,  d = NULL, p = 1)
# OUTPUT
results <- analyse_kinetics(data = data_selection, 
                            method = "fit", 
                            peptide_selection = all_peptides, 
                            start = starting_parameters)
```

```{r}
results$method
```

### Visualise Output from Data Analysis

View fitting curves of Deu-uptake kinetics for all available conditions associated to selected peptides

```{r, fig.width= 22, fig.height = 7}
graphics_kinetics <- visualise_hdx_data(results, type="kinetics") 
graphics_kinetics[[1]] | graphics_kinetics[[2]] | graphics_kinetics[[3]]
```

View forest plots showing the difference between uptake measurements between conditions, plus the dispersion between their respective fitting model parameters

```{r, fig.width= 22, fig.height = 10}
graphics_forest <- visualise_hdx_data(results, type="forest")
graphics_forest[[1]] | graphics_forest[[2]] | graphics_forest[[3]]
```

Combine graphical outputs in a single canvas

```{r, fig.width= 22, fig.height = 10}
graphics_forest[[1]] | graphics_kinetic[[1]]
```
Display numerical values as a table 

```{r}
graphics_forest[[1]]$data
```

### Perform Data Analysis: Differential fitting

* Deuterium-update fitting for data selection 
* Differential fitting - with respect to a *single reference* peptide

```{r}
# INPUT 
data_selection <- hdx_data[,1:100]
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL, b = 0.0001,  d = NULL, p = 1)

# OUTPUT
results <- analyse_kinetics(data = data_selection, 
                            method = "dfit", 
                            peptide_selection = all_peptides[37], 
                            start = starting_parameters)

```

```{r}
graphics_kinetics <- visualise_hdx_data(results, type="kinetics")
```

View graphical output for reference peptide shown in LHS Top corner. 

```{r}
graphics_kinetics
```

## TEST CASE 2

Single-domain antibody (sdAb) binding assays to HOIP.


```{r}
csv_filepath <- "/home/sanjuan/R/x86_64-pc-linux-gnu-library/4.2/hdxstats/extdata/N64184_1a2_state.csv" 
```


```{r}
data <- read_csv(csv_filepath)
make_parameter_file(data, save = "vignettes/data/N64184_1a2_state.hdxp")
```


```{r}
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/N64184_1a2_state.hdxp")
```


```{r}
# INPUT 
data_selection <- hdx_data[,1:33]
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL, b = 0.01,  d = NULL)
formula = value ~ a * (1 - exp(-b*(timepoint))) + d

# OUTPUT
results <- analyse_kinetics(data = data_selection, 
                            method = "dfit", 
                            peptide_selection = all_peptides[3], 
                            start = starting_parameters,
                            formula = formula)
```


```{r}
graphics <- visualise_hdx_data(results, type="kinetics")

custom_colors <- scale_color_manual(values = colorRampPalette(brewer.pal(8, name = "Set2"))(11))
graphics + custom_colors
```

Remove intercept Deu uptake values 

```{r env, message = FALSE, warning = FALSE, echo = FALSE}
hdx_data_nointercept <- mynormalisehdx(hdx_data, method = "intercept")
```

Let's select column data for the APO state and a bound state with a single domain antibody labelled as `dAb25_1` 
```{r}
data_selection <- hdx_data_nointercept[,c(1:3, 10:12)]
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL)
formula = value ~ a * (1 - exp(-0.05*(timepoint)))

results <- analyse_kinetics(data = data_selection,
                            method = "fit",
                            peptide_selection = all_peptides, 
                            start = starting_parameters,
                            formula = formula)
```
Let's have  look at some of the data analysis output data

```{r}
results$functional_analysis@results
```

```{r}
which(results$functional_analysis@results$ebayes.fdr < 0.05)
```

```{r}
graphics <- visualise_hdx_data(results, type="kinetics")
```

```{r, fig.width= 22, fig.height = 15}
graphics[[36]] + 
graphics[[42]] +
graphics[[43]] +
graphics[[65]] +
graphics[[68]] +
graphics[[70]] +
graphics[[52]] +
graphics[[53]] +
plot_layout(guides = 'collect')
```

```{r, fig.width= 12, fig.height = 4}
#graphics <- visualise_hdx_data(results, data_selection=data_selection, type="manhatten", reference = NULL)# <<<<--- NEXT
n_cols <- length(as.vector(colnames(data_selection))$incoperation)

message <- paste("INFO: I found",n_cols,"columns in your data selection. I will split your data selection into two and take their difference.")
print(message)
print(colnames(assay(data_selection)[,1:(n_cols/2)]))
print(colnames(assay(data_selection)[,(1+n_cols/2):n_cols]))

data_diff <- assay(data_selection)[,(1+n_cols/2):n_cols] - assay(data_selection)[,1:(n_cols/2)]

graphics <- list()
for (i in 1:(n_cols/2)){
    graphics[i] <- manhattanplot(params = results$functional_analysis,
                                 sequences = rownames(results$functional_analysis@results), 
                                 region = as.data.frame(data_selection@metadata)[, c("Start", "End")],
                                 difference = data_diff[,i],
                                 nrow = 1)
}

message <- paste("INFO: You have ", length(graphics), "Manhattan plots")
print(message)

graphics[[2]] + plot_layout(guides = 'collect')
```
```{r, fig.width= 12, fig.height = 4}
graphics_manhatten <- visualise_hdx_data(results, data_selection= data_selection, type="manhatten")
graphics_manhatten[[2]] / graphics_manhatten[[3]] + plot_layout(guides = 'collect')
```


```{r, fig.width= 12, fig.height = 4}
#graphics <- visualise_hdx_data(results, type="epitope", level="peptide", fasta = "my_fasta_path") # Return an EpitopeMap

fpath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
HOIPfasta <- readAAStringSet(filepath = fpath, "fasta")

scores <- results$functional_analysis@results$ebayes.fdr

out <- plotEpitopeMap(AAString = HOIPfasta[[1]],
                      peptideSeqs = unlist(lapply(strsplit(rownames(assay(hdx_data_nointercept)), split="_"), function(x) head(x,n=1))),
                      numlines = 2,
                      maxmismatch = 2,
                      by = 1, # NOTE: What's the role of this arg that's never called in function?
                      scores = 1 * (-log10(scores[unique(rownames(assay(hdx_data_nointercept)))])  > -log10(0.05)) + 0.0001,
                      name = "significant")

out[[1]]/(out[[2]]) + plot_layout(guides = 'collect') & theme(legend.position = "right")
```

```{r, fig.width= 12, fig.height = 4}
#graphics <- visualise_hdx_data(results, type="epitope", level="peptide", fasta = "my_fasta_path") # Return an EpitopeMap

fasta <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
data_selection <- hdx_data_nointercept

#################################
fasta_data <- readAAStringSet(filepath = fasta, "fasta")
message <- paste("INFO: You input FASTA file contains", length(fasta_data), ". I will take the first entry by default.")
print(message)

scores <- results$functional_analysis@results$ebayes.fdr
peptide_charge_names <- rownames(results$functional_analysis@results)
peptide_sequences <- unlist(lapply(strsplit(peptide_charge_names, split="_"), function(x) head(x,n=1)))
# NOTE: What about the charged states? Do they get usually ignored?

graphics <- plotEpitopeMap(AAString = fasta_data[[1]],
                      peptideSeqs = peptide_sequences,
                      numlines = 2,
                      maxmismatch = 2,
                      by = 1, # NOTE: What's the role of this arg that's never called in function?
                      scores = 1 * (-log10(scores[unique(peptide_charge_names)])  > -log10(0.05)) + 0.0001,
                      name = "significant")

graphics[[1]]/(graphics[[2]]) + plot_layout(guides = 'collect') & theme(legend.position = "right")
```
```{r, fig.width= 12, fig.height = 4}
fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
graphics_epitope <- visualise_hdx_data(results, type="epitope", level="peptide", fasta = fasta_filepath)

graphics_epitope[[1]]/(graphics_epitope[[2]]) + 
plot_layout(guides = 'collect') & theme(legend.position = "right")
```



```{r, fig.width= 12, fig.height = 4}
#graphics <- visualise_hdx_data(results, type="epitope", level="residue", fasta = "my_fasta_path") # Return heatmap

scores <- results$functional_analysis@results$ebayes.fdr
out2 <- plotEpitopeMapResidue(AAString = HOIPfasta[[1]],
                              peptideSeqs = unlist(lapply(strsplit(rownames(assay(hdx_data_nointercept)), split="_"), function(x) head(x,n=1))),
                              numlines = 2,
                              maxmismatch = 1,
                              by = 5,
                              scores = scores[unique(rownames(assay(hdx_data_nointercept)))],
                              name = "-log10 p value")

out2[[1]]/out2[[2]]  + plot_layout(guides = 'collect') & theme(legend.position = "right")
```

```{r, fig.width= 12, fig.height = 4}
#graphics <- visualise_hdx_data(results, type="epitope", level="residue", fasta = "my_fasta_path") # Return heatmap

fasta <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
#######################################
fasta_data <- readAAStringSet(filepath = fasta, "fasta")
message <- paste("INFO: You input FASTA file contains", length(fasta_data), ". I will take the first entry by default.")
print(message)

peptide_charge_names <- rownames(results$functional_analysis@results)
peptide_sequences <- unlist(lapply(strsplit(peptide_charge_names, split="_"), function(x) head(x,n=1)))

scores <- results$functional_analysis@results$ebayes.fdr

graphics_epitope <- plotEpitopeMapResidue(AAString = fasta_data[[1]],
                                          peptideSeqs = peptide_sequences,
                                          numlines = 2,
                                          maxmismatch = 1,
                                          by = 5,
                                          scores = scores[unique(peptide_charge_names)],
                                          name = "-log10 p value")

graphics_epitope[[1]]/graphics_epitope[[2]]  + plot_layout(guides = 'collect') & theme(legend.position = "right")
```

```{r, fig.width= 12, fig.height = 4}
fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
graphics_epitope <- visualise_hdx_data(results, type="epitope", level="residue", fasta = fasta_filepath)

graphics_epitope[[1]]/(graphics_epitope[[2]]) + 
plot_layout(guides = 'collect') & theme(legend.position = "right")
```
Map data onto PDB

Load essential libraries

```{r,}
library("NGLVieweR")
library("tidyverse")
library("RColorBrewer")
library("scales")
library("comprehenr")
library("bio3d")
```

Map protection/deprotection heatmaps onto PDB

```{r}
source("R/pdb-visualisation.R")
```


```{r}
scores <- results$functional_analysis@results$ebayes.fdr

peptide_charge_names <- rownames(results$functional_analysis@results)
peptide_sequences <- unlist(lapply(strsplit(peptide_charge_names, split="_"), function(x) head(x,n=1)))

graphics_data <- ComputeAverageMap(AAString = fasta_data[[1]],
                            peptideSeqs = unique(peptide_sequences),
                            numlines = 2, maxmismatch = 1,
                            by = 10, scores = scores[unique(peptide_charge_names)],
                            name = "-log10 p value")
```


```{r}
dataset <- graphics_data
pdb_filepath <- "vignettes/data/5edv_chainA_clean_renumbered.pdb"
mycolor_parameters <- hdx_to_pdb_colours(dataset, pdb_filepath)
```


```{r}

graphics <- NGLVieweR(pdb_filepath) %>%
  stageParameters(backgroundColor = "white", zoomSpeed = 1) %>%
  addRepresentation("cartoon") %>%
  addRepresentation("cartoon", param = list(color=mycolor_parameters, backgroundColor="white")) #%>%
  #setSpin()
```


```{r}
graphics
```



```{r}
pdb_filepath <- "vignettes/data/5edv_chainA_clean_renumbered.pdb"
graphics_pdbview <- visualise_hdx_data(results, type="epitope", level="residue", fasta=fasta_filepath, pdb=pdb_filepath)

graphics_pdbview #%>% setSpin()
```


Protection/Deprotection heatmap 

```{r}
fasta <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
fasta_data <- readAAStringSet(filepath = fasta, "fasta")

scores <- results$functional_analysis@results$ebayes.fdr
peptide_charge_names <- rownames(results$functional_analysis@results)
peptide_sequences <- unlist(lapply(strsplit(peptide_charge_names, split="_"), function(x) head(x,n=1)))

n_cols <- length(as.vector(colnames(data_selection))$incoperation)

message <- paste("INFO: I found",n_cols,"columns in your data selection. I will split your data selection into two and take their difference.")
print(message)
print(colnames(assay(data_selection)[,1:(n_cols/2)]))
print(colnames(assay(data_selection)[,(1+n_cols/2):n_cols]))

hdx_average <- ComputeAverageMap(AAString = fasta_data[[1]],
                                 peptideSeqs = unique(peptide_sequences),
                                 numlines = 2, 
                                 maxmismatch = 1,
                                 by = 10, 
                                 scores = scores[unique(peptide_charge_names)],
                                 name = "-log10 p value")
hdx_diff <- list()
graphics <- list()
qDF <- data_selection
for (i in 1:(n_cols/2)){
    hdx_diff[[i]] <- hdxdifference(object = data_selection,
                                    AAString = fasta_data[[1]],
                                    peptideSeqs = unique(peptide_sequences),
                                    numlines = 2,
                                    maxmismatch = 1,
                                    by = 10,
                                    scores = scores[unique(peptide_charge_names)],
                                    cols = c(i,(n_cols/2 + i)),
                                    name = "-log10 p value (signed)")
    
    graphics[[i]] <- hdxheatmap(averageMaps = list(hdx_average), diffMaps = list(hdx_diff[[i]]$diffMap)) 
}

message <- paste("INFO: You have ", length(graphics), "Protection/Deprotection heatmaps")
print(message)
```

```{r, fig.width= 12, fig.height = 4}
graphics[[3]][[1]] / graphics[[3]][[2]] + plot_layout(guides = 'collect') & theme(legend.position = "right")
```

```{r}
fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
qDF <- data_selection
graphics_protection <- visualise_hdx_data(results, 
                                          type="protection", 
                                          data_selection=data_selection,
                                          level="residue",
                                          fasta = fasta_filepath)
```

```{r, fig.width= 12, fig.height = 4}
graphics <- graphics_protection
graphics[[2]][[1]] / graphics[[2]][[2]] +
    plot_layout(guides = 'collect') & theme(legend.position = "right")
```

```{r}
pdb_filepath <- "vignettes/data/5edv_chainA_clean_renumbered.pdb"
graphics <- list()
for (i in 1:(n_cols/2)){
    graphics_data <- hdx_average + sign(hdx_diff[[i]]$diffMap)
    mycolor_parameters <- hdx_to_pdb_colours(graphics_data, pdb, cmap_name = "ProtDeprot")
    graphics[[i]] <- NGLVieweR(pdb_filepath) %>%
      stageParameters(backgroundColor = "white", zoomSpeed = 1) %>%
      addRepresentation("cartoon") %>%
      addRepresentation("cartoon", param = list(color=mycolor_parameters, backgroundColor="Prot"))
}
```

```{r}
graphics[[3]]
```

```{r}
pdb_filepath <- "vignettes/data/5edv_chainA_clean_renumbered.pdb"
graphics_pdbview <- visualise_hdx_data(results, 
                                       data_selection=data_selection,
                                       type="protection", 
                                       level="residue", 
                                       fasta=fasta_filepath, 
                                       pdb=pdb_filepath)
```
```{r}
graphics_pdbview[[3]] %>% setSpin()
```


# TEST CASE 3

Original raw data
```{r}
#csv_filepath <- "inst/extdata/Project_2_SecA_Cluster_Data.csv"
#data <- read_csv(csv_filepath)
#data$Replicate <- unlist(lapply(strsplit(data$File, split="_"), function(x) tail(x, n=1)))
#write_csv(data, file = "inst/extdata/Project_2_SecA_Cluster_Data_edited.csv")

csv_filepath <- "inst/extdata/Project_2_SecA_Cluster_Data_edited.csv"
```

Had to pre-process its content to add Replicate column

```{r}
#data <- read_csv(csv_filepath)
#make_parameter_file(data, save = "vignettes/data/Project_2_SecA_Cluster_Data.hdxp")
```

```{r}
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/Project_2_SecA_Cluster_Data.hdxp")
```




```{r, fig.height = 20, fig.width = 80, fig.align = "center"}
pheatmap(t(assay(hdx_data)),
         cluster_rows = FALSE, 
         cluster_cols = FALSE,
         color = brewer.pal(n = 9, name = "BuPu"),
         main = "secA heatmap", 
         fontsize = 14,
         legend_breaks = c(0, 1, 2, 3, 4, 5, 6, max(assay(hdx_data))),
         legend_labels = c("0", "1", "2", "3", "4", "5", "6", "Incorporation"))
```


```{r}
# Find out how many unique peptides and charge states exist
length(rownames(assay(hdx_data)))
# Extract all column values for a given peptide and charge state ( all states, all replicates, all timepoints)
peptide_charge <- "VIMDF_1" # "SSQYESAL_1"
Deu_min_global <- apply(assay(hdx_data), 1, function(x) min(x, na.rm = TRUE))[[peptide_charge]]
peptide_charge_data <- as.data.frame(assay(hdx_data))[peptide_charge, ]
peptide_charge_data <- longFormat(peptide_charge_data)
peptide_charge_data$condition <- as.factor(str_match(peptide_charge_data$colname, "cond\\s*(.*)")[, 2]) # Modify this for data analysis functions since they expect a numeric for replicates
peptide_charge_conditions <- unique(peptide_charge_data$condition)
# For a fixed confition
state <- "SecAYEG_AMPPNP"
ldf <- peptide_charge_data %>% subset(condition == state)
ldf$timepoint <- as.numeric(str_match(ldf$colname, "X\\s*(.*?)\\s*rep")[, 2])
ldf$replicates <- as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])
# Identify if number of replicates for 0 timepoint match for subsequent timepoints and report if not the case
#sum(ldf$timepoint == 0)
#length(unique(ldf$timepoint))
ldf$replicates <- unlist(lapply(strsplit(as.vector(as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])), split="_"), function(x) tail(x, n=1)))

# Subtract Deu uptake value at 0 timepoint
replicate_number <- 3
single_replicate_data <- ldf %>% subset(replicates == replicate_number)
x <- single_replicate_data %>% subset(timepoint == 0) # NOTE: Sometimes there will be more than one 0 timepoint
message <- paste("INFO: You have", length(x$value),"Deu uptake values for the zero timepoint.")
print(message)

if (all(is.na(x$value))){
    message <- "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
    print(message)
    single_replicate_data$value <- single_replicate_data$value - Deu_min_global
    print(single_replicate_data)
}else{
    message <- "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
    print(message)
    Deu_min <- min(x$value, na.rm = TRUE)
    print("BEFORE")
    print(single_replicate_data)
    single_replicate_data$value <- single_replicate_data$value - Deu_min
    print("AFTER")
    print(single_replicate_data)
}
```


```{r}
message <-paste("INFO: You have", length(rownames(assay(hdx_data))), "peptide-charge paired values")
print(message)
ldf_new <- rbind()
for (peptide_charge in rownames(assay(hdx_data))){
  peptide_charge_data <- as.data.frame(assay(hdx_data))[peptide_charge, ]
  peptide_charge_data <- longFormat(peptide_charge_data)
  peptide_charge_data$condition <- as.factor(str_match(peptide_charge_data$colname, "cond\\s*(.*)")[, 2])
  
  Deu_min_global <- apply(assay(hdx_data), 1, function(x) min(x, na.rm = TRUE))[[peptide_charge]]
  
  peptide_charge_conditions <- unique(peptide_charge_data$condition)
  message <- paste("INFO: For ", peptide_charge, ", you have", length(peptide_charge_conditions), "conditions")
  print(message)
  
  #ldf_new <- rbind()
  for (state in peptide_charge_conditions){
    ldf <- peptide_charge_data %>% subset(condition == state)
    ldf$timepoint <- as.numeric(str_match(ldf$colname, "X\\s*(.*?)\\s*rep")[, 2])
    ldf$replicates <- as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])
    
    ldf$replicates <- unlist(lapply(strsplit(as.vector(as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])), split="_"), function(x) tail(x, n=1)))
    # Subtract Deu uptake value at 0 timepoint
    message <- paste("INFO: You have", length(unique(ldf$replicates)), "replicates, for", state)
    print(message)
    
    for (n_replicate in unique(ldf$replicates)){
      single_replicate_data <- ldf %>% subset(replicates == n_replicate)
      x <- single_replicate_data %>% subset(timepoint == 0)
      
      if (all(is.na(x$value))){
        message <- "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
        print(message)
        single_replicate_data$value <- single_replicate_data$value - Deu_min_global
        #print(single_replicate_data)
        ldf_new <- rbind(ldf_new, single_replicate_data)
        }else{
            message <- "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
            print(message)
            Deu_min <- min(x$value, na.rm = TRUE)
            single_replicate_data$value <- single_replicate_data$value - Deu_min
            #print(single_replicate_data)
            ldf_new <- rbind(ldf_new, single_replicate_data)
        }
    }
  }
}

x <- DataFrame(ldf_new)
x_wide <- pivot_wider(data.frame(x), values_from = value, id_cols = rowname, names_from = colname)
x_wide_df <- DataFrame(x_wide)
x_wide_df$rownames <- x_wide$rowname
qFeat <- readQFeatures(data.frame(x_wide_df), ecol = 1:ncol(assay(hdx_data)), name = names(hdx_data), fnames = "rownames")
```


```{r}
#graphics <- visualise_hdx_data(results, type="kinetics") # READY
#graphics <- visualise_hdx_data(results, type="forest") # READY

# NOTE: This only works to compare ONLY TWO distinct conditions, for the same timepoint, for all peptide fragments
# This needs to define a BASELINE state/condition and an ALTERNATE sate/condition
# NOTE: Data must be normalised by intercept 
#graphics <- visualise_hdx_data(results, type="manhatten", reference = NULL)# <<<<--- NEXT
#graphics <- visualise_hdx_data(results, type="epitope", level="peptide", fasta = "my_fasta_path") # Return an EpitopeMap # <<<<--- NEXT
#graphics <- visualise_hdx_data(results, type="epitope", level="residue", fasta = "my_fasta_path") # Return heatmap # <<<<--- NEXT
#graphics <- visualise_hdx_data(results, type="epitope", level="residue", pdb="my_pdb_path") # Return heatmap projected onto PDB # <<<<--- NEXT

#graphics <- visualise_hdx_data(results, type="protection", level="peptide") # Return heatmap for peptide residue-number ranges
graphics <- visualise_hdx_data(results, type="protection", level="residue", fasta = "my_fasta_path") # Return heatmap
graphics <- visualise_hdx_data(results, type="protection", level="residue", pdb="my_pdb_path") # Return heatmap projected onto PDB

# GUI: Make GUI by assembling these building blocks

```

